SNP Profiles of IMC 67   View Data

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 Key

 1234567891011121314
_Input profile
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
1._GC-05-082-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
2._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
3._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
4._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
5._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
6._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
7._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
8._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
9._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
10._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
11._GC-05-82-2-33
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
12._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
13._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
14._RUQ_1056
__GG____GT_CC_GG_AA
15._RUQ_1056
CCAGGGTTCTCCTTGTCCCCAAGGCCAG
16._IMC_67
CCAGGGTTCTCCTTGTCCCCAAGGCCAG
17._RUQ_1056
_AGGGTT___GT____CCAA
18._IMC67
__CG_________CC_
19._GC-05-82-2-33
GGAGCCAAAGCCAAAC__AAGGGGAA
20._GC-05-82-2-33
GGAGCCAAAGCCAAAC__AAGGGGAA
21._RUQ_1056
GGAGCCAAAGCCAAAC__AAGGGGAA
22._IMC_67_Fld#_152A_Plt#_1
GGAGCCAAAGCCAAAC__AAGGGGAA
23._IMC_67_Fld#_152B_Plt#_4
GGAAGGAGAGCCAAAA__AAGGGGAA
 1516171819202122232425262728
_Input profile
TTAAGGCCCTCCGGCCACGGGTCCACAA
1._GC-05-082-2-33
TTAAGGCCCTCCGGCCACGGGTCCACAA
2._GC-05-82-2-33
TTAAGGCCCTCCGGCCACGGGTCCACAA
3._GC-05-82-2-33
TTAAGGCCCTCCGGCCACGGGTCCACAA
4._IMC_67
TTAAGGCCCTCCGGCCACGGGTCCACAA
5._IMC_67
TTAAGGCCCTCCGGCCACGGGTCCACAA
6._IMC_67
TTAAGGCCCTCCGGCCACGGGTCCACAA
7._IMC_67
TTAAGGCCCTCCGGCCACGGGTCCACAA
8._IMC_67
TTAAGGCCCTCCGGCCACGGGTCCACAA
9._IMC_67
TTAAGGCCCTCCGGCCACGGGTCCACAA
10._GC-05-82-2-33
TTAAGGCCCTCCGGCCACGGGTCCACAA
11._GC-05-82-2-33
TTAAGGCCCTCCGGCCACGGGTCCACAA
12._IMC_67
TTAAGGCCCTCCGGCCACGGGTCCACAA
13._IMC_67
TTAAGGCCCTCCGGCCACGGGTCCACAA
14._RUQ_1056
_____CCGG_ACGG__AC_
15._RUQ_1056
TTAAGGCCCTCCGGCCACGGGTCCACAA
16._IMC_67
TTAAGGCCCTCCGGCCACGGGTCCACAA
17._RUQ_1056
____TTCCGGCCACCGGTCCACAA
18._IMC67
CC___CCCG__ACGG____
19._GC-05-82-2-33
AAAAGGGGAGGGCCGGACCGAC_AC_
20._GC-05-82-2-33
AAAAGGGGAGGGCCGGACCGAC_AC_
21._RUQ_1056
AAAAGGGGAGGGCCGGACCGAC_AC_
22._IMC_67_Fld#_152A_Plt#_1
AAAAGGGGAGGGCCGGACCGAC_AC_
23._IMC_67_Fld#_152B_Plt#_4
AGATCGAAAGGGCCAAACGGCC_CC_
 2930313233343536373839   
_Input profile
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
1._GC-05-082-2-33
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
2._GC-05-82-2-33
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
3._GC-05-82-2-33
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
4._IMC_67
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
5._IMC_67
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
6._IMC_67
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
7._IMC_67
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
8._IMC_67
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
9._IMC_67
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
10._GC-05-82-2-33
GG_CTAGCGACCTGTCCTTGGX_XX_XX_X
11._GC-05-82-2-33
GG_CTAGCGACCTGTCCTTGGX_XX_XX_X
12._IMC_67
GG_CTAGCGACCTGTCCTTGGX_XX_XX_X
13._IMC_67
GG_CTAGCGACCTGTCCTTGGX_XX_XX_X
14._RUQ_1056
___AG____CC__X_XX_XX_X
15._RUQ_1056
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
16._IMC_67
GGAACTAGCGACCTGTCCTTGGX_XX_XX_X
17._RUQ_1056
_AACTAGCGACCTGTCC__X_XX_XX_X
18._IMC67
_AT_AAGGACCT_AA__X_XX_XX_X
19._GC-05-82-2-33
GGAAAGAGCGACAGACCCTTGGX_XX_XX_X
20._GC-05-82-2-33
GGAAAGAGCGACAGACCCTTGGX_XX_XX_X
21._RUQ_1056
GGAAAGAGCGACAGACCCTTGGX_XX_XX_X
22._IMC_67_Fld#_152A_Plt#_1
GGAAAGAGCGACAGACCCTTGGX_XX_XX_X
23._IMC_67_Fld#_152B_Plt#_4
GGAAAGGGGGCCAACCACAACGX_XX_XX_X

Input profile: IMC_67

 
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Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

1._IMC_67 GC-05-082-2-33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._IMC_67 GC-05-82-2-33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

3._IMC_67 GC-05-82-2-33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

4._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

5._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

6._IMC_67

identical
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

7._IMC_67

identical
39 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

8._IMC_67

identical
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

9._IMC_67

identical
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

10._IMC_67 GC-05-82-2-33

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

11._IMC_67 GC-05-82-2-33

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

12._IMC_67

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

13._IMC_67

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

14._IMC_67 RUQ_1056

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._IMC_67 RUQ_1056

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._IMC_67

98.7 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

17._IMC_67 RUQ_1056

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._IMC_67 IMC67

61.5 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

19._IMC_67 GC-05-82-2-33

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._IMC_67 GC-05-82-2-33

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._IMC_67 RUQ_1056

50 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152A_Plt#_1

50 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152B_Plt#_4

38.6 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25